J6_4YPB_001
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC
- Length
- 36 nucleotides
- Bulged bases
- 4YPB|1|RA|A|223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4YPB|1|RA|G|44
4YPB|1|RA|C|45
*
4YPB|1|RA|G|179
4YPB|1|RA|G|180
4YPB|1|RA|A|181
4YPB|1|RA|A|182
4YPB|1|RA|C|183
*
4YPB|1|RA|G|214
4YPB|1|RA|G|215
4YPB|1|RA|A|216
4YPB|1|RA|G|217
4YPB|1|RA|A|218
4YPB|1|RA|G|219
4YPB|1|RA|G|220
4YPB|1|RA|A|221
4YPB|1|RA|A|222
4YPB|1|RA|A|223
4YPB|1|RA|G|224
*
4YPB|1|RA|C|231
4YPB|1|RA|G|232
4YPB|1|RA|A|233
4YPB|1|RA|C|234
4YPB|1|RA|U|235
*
4YPB|1|RA|A|262
4YPB|1|RA|C|263
4YPB|1|RA|C|264
4YPB|1|RA|A|265
4YPB|1|RA|G|266
*
4YPB|1|RA|C|426
4YPB|1|RA|U|427
4YPB|1|RA|A|428
4YPB|1|RA|A|429
4YPB|1|RA|G|430
4YPB|1|RA|U|431
4YPB|1|RA|A|432
4YPB|1|RA|C|433
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R7
- 50S ribosomal protein L34
Coloring options: