J6_4YPB_004
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 4YPB|1|YA|U|2076, 4YPB|1|YA|A|2388, 4YPB|1|YA|U|2390, 4YPB|1|YA|G|2428, 4YPB|1|YA|A|2430, 4YPB|1|YA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4YPB|1|YA|U|2074
4YPB|1|YA|U|2075
4YPB|1|YA|U|2076
4YPB|1|YA|A|2077
*
4YPB|1|YA|U|2243
4YPB|1|YA|U|2244
4YPB|1|YA|U|2245
4YPB|1|YA|G|2246
*
4YPB|1|YA|C|2258
4YPB|1|YA|G|2259
*
4YPB|1|YA|C|2281
4YPB|1|YA|G|2282
4YPB|1|YA|C|2283
4YPB|1|YA|C|2284
*
4YPB|1|YA|G|2384
4YPB|1|YA|C|2385
4YPB|1|YA|C|2386
4YPB|1|YA|U|2387
4YPB|1|YA|A|2388
4YPB|1|YA|G|2389
4YPB|1|YA|U|2390
4YPB|1|YA|G|2391
4YPB|1|YA|A|2392
4YPB|1|YA|A|2393
4YPB|1|YA|C|2394
4YPB|1|YA|C|2395
*
4YPB|1|YA|G|2421
4YPB|1|YA|A|2422
4YPB|1|YA|U|2423
4YPB|1|YA|C|2424
4YPB|1|YA|A|2425
4YPB|1|YA|A|2426
4YPB|1|YA|C|2427
4YPB|1|YA|G|2428
4YPB|1|YA|G|2429
4YPB|1|YA|A|2430
4YPB|1|YA|U|2431
4YPB|1|YA|A|2432
4YPB|1|YA|A|2433
4YPB|1|YA|A|2434
4YPB|1|YA|A|2435
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XW
- Transfer RNA; tRNA
- Chain Y0
- 50S ribosomal protein L27
- Chain Y1
- 50S ribosomal protein L28
- Chain Y6
- 50S ribosomal protein L33
- Chain Y8
- 50S ribosomal protein L35
- Chain YD
- 50S ribosomal protein L2
- Chain YP
- 50S ribosomal protein L15
Coloring options: