J6_4Z8C_001

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4Z8C|1|1A|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Z8C|1|1A|G|43
4Z8C|1|1A|C|44
*
4Z8C|1|1A|G|167
4Z8C|1|1A|G|168
4Z8C|1|1A|A|169
4Z8C|1|1A|A|170
4Z8C|1|1A|C|171
*
4Z8C|1|1A|G|202
4Z8C|1|1A|G|203
4Z8C|1|1A|A|204
4Z8C|1|1A|G|205
4Z8C|1|1A|A|206
4Z8C|1|1A|G|207
4Z8C|1|1A|G|208
4Z8C|1|1A|A|209
4Z8C|1|1A|A|210
4Z8C|1|1A|A|211
4Z8C|1|1A|G|212
*
4Z8C|1|1A|C|219
4Z8C|1|1A|G|220
4Z8C|1|1A|A|221
4Z8C|1|1A|C|222
4Z8C|1|1A|U|223
*
4Z8C|1|1A|A|250
4Z8C|1|1A|C|251
4Z8C|1|1A|C|252
4Z8C|1|1A|A|253
4Z8C|1|1A|G|254
*
4Z8C|1|1A|C|452
4Z8C|1|1A|U|453
4Z8C|1|1A|A|454
4Z8C|1|1A|A|455
4Z8C|1|1A|G|456
4Z8C|1|1A|U|457
4Z8C|1|1A|A|458
4Z8C|1|1A|C|459

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34