J6_4Z8C_004
3D structure
- PDB id
- 4Z8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 4Z8C|1|2A|U|2097, 4Z8C|1|2A|A|2399, 4Z8C|1|2A|U|2401, 4Z8C|1|2A|G|2439, 4Z8C|1|2A|A|2441, 4Z8C|1|2A|U|2442
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4Z8C|1|2A|U|2095
4Z8C|1|2A|U|2096
4Z8C|1|2A|U|2097
4Z8C|1|2A|A|2098
*
4Z8C|1|2A|U|2254
4Z8C|1|2A|U|2255
4Z8C|1|2A|U|2256
4Z8C|1|2A|G|2257
*
4Z8C|1|2A|C|2269
4Z8C|1|2A|G|2270
*
4Z8C|1|2A|C|2292
4Z8C|1|2A|G|2293
4Z8C|1|2A|C|2294
4Z8C|1|2A|C|2295
*
4Z8C|1|2A|G|2395
4Z8C|1|2A|C|2396
4Z8C|1|2A|C|2397
4Z8C|1|2A|U|2398
4Z8C|1|2A|A|2399
4Z8C|1|2A|G|2400
4Z8C|1|2A|U|2401
4Z8C|1|2A|G|2402
4Z8C|1|2A|A|2403
4Z8C|1|2A|A|2404
4Z8C|1|2A|C|2405
4Z8C|1|2A|C|2406
*
4Z8C|1|2A|G|2432
4Z8C|1|2A|A|2433
4Z8C|1|2A|U|2434
4Z8C|1|2A|C|2435
4Z8C|1|2A|A|2436
4Z8C|1|2A|A|2437
4Z8C|1|2A|C|2438
4Z8C|1|2A|G|2439
4Z8C|1|2A|G|2440
4Z8C|1|2A|A|2441
4Z8C|1|2A|U|2442
4Z8C|1|2A|A|2443
4Z8C|1|2A|A|2444
4Z8C|1|2A|A|2445
4Z8C|1|2A|A|2446
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 21
- 50S ribosomal protein L28
- Chain 26
- 50S ribosomal protein L33
- Chain 28
- 50S ribosomal protein L35
- Chain 2D
- 50S ribosomal protein L2
- Chain 2P
- 50S ribosomal protein L15
Coloring options: