J6_4ZER_001

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4ZER|1|1A|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4ZER|1|1A|G|44
4ZER|1|1A|C|45
*
4ZER|1|1A|G|168
4ZER|1|1A|G|169
4ZER|1|1A|A|170
4ZER|1|1A|A|171
4ZER|1|1A|C|172
*
4ZER|1|1A|G|203
4ZER|1|1A|G|204
4ZER|1|1A|A|205
4ZER|1|1A|G|206
4ZER|1|1A|A|207
4ZER|1|1A|G|208
4ZER|1|1A|G|209
4ZER|1|1A|A|210
4ZER|1|1A|A|211
4ZER|1|1A|A|212
4ZER|1|1A|G|213
*
4ZER|1|1A|C|220
4ZER|1|1A|G|221
4ZER|1|1A|A|222
4ZER|1|1A|C|223
4ZER|1|1A|U|224
*
4ZER|1|1A|A|251
4ZER|1|1A|C|252
4ZER|1|1A|C|253
4ZER|1|1A|A|254
4ZER|1|1A|G|255
*
4ZER|1|1A|C|453
4ZER|1|1A|U|454
4ZER|1|1A|A|455
4ZER|1|1A|A|456
4ZER|1|1A|G|457
4ZER|1|1A|U|458
4ZER|1|1A|A|459
4ZER|1|1A|C|460

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34