J6_4ZER_003

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4ZER|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4ZER|1|2A|G|44
4ZER|1|2A|C|45
*
4ZER|1|2A|G|179
4ZER|1|2A|G|180
4ZER|1|2A|A|181
4ZER|1|2A|A|182
4ZER|1|2A|C|183
*
4ZER|1|2A|G|214
4ZER|1|2A|G|215
4ZER|1|2A|A|216
4ZER|1|2A|G|217
4ZER|1|2A|A|218
4ZER|1|2A|G|219
4ZER|1|2A|G|220
4ZER|1|2A|A|221
4ZER|1|2A|A|222
4ZER|1|2A|A|223
4ZER|1|2A|G|224
*
4ZER|1|2A|C|231
4ZER|1|2A|G|232
4ZER|1|2A|A|233
4ZER|1|2A|C|234
4ZER|1|2A|U|235
*
4ZER|1|2A|A|262
4ZER|1|2A|C|263
4ZER|1|2A|C|264
4ZER|1|2A|A|265
4ZER|1|2A|G|266
*
4ZER|1|2A|C|426
4ZER|1|2A|U|427
4ZER|1|2A|A|428
4ZER|1|2A|A|429
4ZER|1|2A|G|430
4ZER|1|2A|U|431
4ZER|1|2A|A|432
4ZER|1|2A|C|433

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34