Loop J6_5AA0

3D structure

PDB id: 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
Experimental method: ELECTRON MICROSCOPY
Resolution: 5 Å

Loop

Sequence: GCC*GGGAAC*GAGAGGAAAG*CGACU*ACCAG*CUAAGUAC
Length: 37 nucleotides
Bulged bases: 5AA0|1|AA|A|223||||P_1, 5AA0|1|AA|C|263||||P_1, 5AA0|1|AA|C|264||||P_1
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5AA0|1|AA|G|45||||P_1
5AA0|1|AA|C|46||||P_1
5AA0|1|AA|C|47||||P_1
*
5AA0|1|AA|G|178||||P_1
5AA0|1|AA|G|179||||P_1
5AA0|1|AA|G|180||||P_1
5AA0|1|AA|A|181||||P_1
5AA0|1|AA|A|182||||P_1
5AA0|1|AA|C|183||||P_1
*
5AA0|1|AA|G|215||||P_1
5AA0|1|AA|A|216||||P_1
5AA0|1|AA|G|217||||P_1
5AA0|1|AA|A|218||||P_1
5AA0|1|AA|G|219||||P_1
5AA0|1|AA|G|220||||P_1
5AA0|1|AA|A|221||||P_1
5AA0|1|AA|A|222||||P_1
5AA0|1|AA|A|223||||P_1
5AA0|1|AA|G|224||||P_1
*
5AA0|1|AA|C|231||||P_1
5AA0|1|AA|G|232||||P_1
5AA0|1|AA|A|233||||P_1
5AA0|1|AA|C|234||||P_1
5AA0|1|AA|U|235||||P_1
*
5AA0|1|AA|A|262||||P_1
5AA0|1|AA|C|263||||P_1
5AA0|1|AA|C|264||||P_1
5AA0|1|AA|A|265||||P_1
5AA0|1|AA|G|266||||P_1
*
5AA0|1|AA|C|426||||P_1
5AA0|1|AA|U|427||||P_1
5AA0|1|AA|A|428||||P_1
5AA0|1|AA|A|429||||P_1
5AA0|1|AA|G|430||||P_1
5AA0|1|AA|U|431||||P_1
5AA0|1|AA|A|432||||P_1
5AA0|1|AA|C|433||||P_1

Current chains

Chain AA: 23S ribosomal RNA

Nearby chains

Chain Ad: 50S ribosomal protein L34

J6_5AA0_001