J6_5AA0_002
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 5AA0|1|AA|U|2075||||P_1, 5AA0|1|AA|U|2076||||P_1, 5AA0|1|AA|A|2388||||P_1, 5AA0|1|AA|A|2430||||P_1, 5AA0|1|AA|U|2431||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AA0|1|AA|U|2074||||P_1
5AA0|1|AA|U|2075||||P_1
5AA0|1|AA|U|2076||||P_1
5AA0|1|AA|A|2077||||P_1
*
5AA0|1|AA|U|2243||||P_1
5AA0|1|AA|U|2244||||P_1
5AA0|1|AA|U|2245||||P_1
5AA0|1|AA|G|2246||||P_1
*
5AA0|1|AA|C|2258||||P_1
5AA0|1|AA|G|2259||||P_1
*
5AA0|1|AA|C|2281||||P_1
5AA0|1|AA|G|2282||||P_1
5AA0|1|AA|C|2283||||P_1
5AA0|1|AA|C|2284||||P_1
*
5AA0|1|AA|G|2384||||P_1
5AA0|1|AA|C|2385||||P_1
5AA0|1|AA|C|2386||||P_1
5AA0|1|AA|U|2387||||P_1
5AA0|1|AA|A|2388||||P_1
5AA0|1|AA|G|2389||||P_1
5AA0|1|AA|U|2390||||P_1
5AA0|1|AA|G|2391||||P_1
5AA0|1|AA|A|2392||||P_1
5AA0|1|AA|A|2393||||P_1
5AA0|1|AA|C|2394||||P_1
5AA0|1|AA|C|2395||||P_1
*
5AA0|1|AA|G|2421||||P_1
5AA0|1|AA|A|2422||||P_1
5AA0|1|AA|U|2423||||P_1
5AA0|1|AA|C|2424||||P_1
5AA0|1|AA|A|2425||||P_1
5AA0|1|AA|A|2426||||P_1
5AA0|1|AA|C|2427||||P_1
5AA0|1|AA|G|2428||||P_1
5AA0|1|AA|G|2429||||P_1
5AA0|1|AA|A|2430||||P_1
5AA0|1|AA|U|2431||||P_1
5AA0|1|AA|A|2432||||P_1
5AA0|1|AA|A|2433||||P_1
5AA0|1|AA|A|2434||||P_1
5AA0|1|AA|A|2435||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AD
- 50S ribosomal protein L2
- Chain AM
- 50S ribosomal protein L15
- Chain AX
- 50S ribosomal protein L27
- Chain Aa
- 50S ribosomal protein L31
- Chain Ac
- 50S ribosomal protein L33
- Chain Ae
- 50S ribosomal protein L35
- Chain BC
- Transfer RNA; tRNA
- Chain BE
- Transfer RNA; tRNA
Coloring options: