J6_5ADY_003

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GG*CGAACC*GAGGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

39 nucleotides

Bulged bases

5ADY|1|B|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5ADY|1|B|G|45
5ADY|1|B|G|46
*
5ADY|1|B|C|179
5ADY|1|B|G|180
5ADY|1|B|A|181
5ADY|1|B|A|182
5ADY|1|B|C|183
5ADY|1|B|C|184
*
5ADY|1|B|G|212
5ADY|1|B|A|213
5ADY|1|B|G|214
5ADY|1|B|G|215
5ADY|1|B|A|216
5ADY|1|B|A|217
5ADY|1|B|A|218
5ADY|1|B|A|219
5ADY|1|B|G|220
5ADY|1|B|A|221
5ADY|1|B|A|222
5ADY|1|B|A|223
5ADY|1|B|U|224
*
5ADY|1|B|A|231
5ADY|1|B|G|232
5ADY|1|B|A|233
5ADY|1|B|U|234
5ADY|1|B|U|235
*
5ADY|1|B|A|262
5ADY|1|B|G|263
5ADY|1|B|C|264
5ADY|1|B|A|265
5ADY|1|B|G|266
*
5ADY|1|B|C|426
5ADY|1|B|U|427
5ADY|1|B|A|428
5ADY|1|B|A|429
5ADY|1|B|A|430
5ADY|1|B|U|431
5ADY|1|B|A|432
5ADY|1|B|C|433

Current chains

Chain B

23S RRNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34