J6_5AFI_001
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC
- Length
- 36 nucleotides
- Bulged bases
- 5AFI|1|A|A|223||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AFI|1|A|G|45||||P_1
5AFI|1|A|G|46||||P_1
*
5AFI|1|A|C|179||||P_1
5AFI|1|A|G|180||||P_1
5AFI|1|A|A|181||||P_1
5AFI|1|A|A|182||||P_1
5AFI|1|A|C|183||||P_1
*
5AFI|1|A|G|214||||P_1
5AFI|1|A|G|215||||P_1
5AFI|1|A|A|216||||P_1
5AFI|1|A|A|217||||P_1
5AFI|1|A|A|218||||P_1
5AFI|1|A|A|219||||P_1
5AFI|1|A|G|220||||P_1
5AFI|1|A|A|221||||P_1
5AFI|1|A|A|222||||P_1
5AFI|1|A|A|223||||P_1
5AFI|1|A|U|224||||P_1
*
5AFI|1|A|A|231||||P_1
5AFI|1|A|G|232||||P_1
5AFI|1|A|A|233||||P_1
5AFI|1|A|U|234||||P_1
5AFI|1|A|U|235||||P_1
*
5AFI|1|A|A|262||||P_1
5AFI|1|A|G|263||||P_1
5AFI|1|A|C|264||||P_1
5AFI|1|A|A|265||||P_1
5AFI|1|A|G|266||||P_1
*
5AFI|1|A|C|426||||P_1
5AFI|1|A|U|427||||P_1
5AFI|1|A|A|428||||P_1
5AFI|1|A|A|429||||P_1
5AFI|1|A|A|430||||P_1
5AFI|1|A|U|431||||P_1
5AFI|1|A|A|432||||P_1
5AFI|1|A|C|433||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
Coloring options: