J6_5APO_001
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 5APO|1|5|A|67||||P_1, 5APO|1|5|U|329||||P_1, 5APO|1|8|U|34||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5APO|1|5|G|22||||P_1
5APO|1|5|A|23||||P_1
5APO|1|5|G|24||||P_1
5APO|1|5|U|25||||P_1
5APO|1|5|A|26||||P_1
5APO|1|5|C|27||||P_1
*
5APO|1|5|G|58||||P_1
5APO|1|5|G|59||||P_1
5APO|1|5|A|60||||P_1
5APO|1|5|A|61||||P_1
5APO|1|5|A|62||||P_1
5APO|1|5|A|63||||P_1
5APO|1|5|G|64||||P_1
5APO|1|5|A|65||||P_1
5APO|1|5|A|66||||P_1
5APO|1|5|A|67||||P_1
5APO|1|5|C|68||||P_1
*
5APO|1|5|G|75||||P_1
5APO|1|5|G|76||||P_1
5APO|1|5|A|77||||P_1
5APO|1|5|U|78||||P_1
5APO|1|5|U|79||||P_1
*
5APO|1|5|A|106||||P_1
5APO|1|5|A|107||||P_1
5APO|1|5|A|108||||P_1
5APO|1|5|A|109||||P_1
5APO|1|5|G|110||||P_1
*
5APO|1|5|C|321||||P_1
5APO|1|5|U|322||||P_1
5APO|1|5|A|323||||P_1
5APO|1|5|A|324||||P_1
5APO|1|5|A|325||||P_1
5APO|1|5|U|326||||P_1
5APO|1|5|A|327||||P_1
5APO|1|5|U|328||||P_1
5APO|1|5|U|329||||P_1
5APO|1|5|G|330||||P_1
5APO|1|5|G|331||||P_1
*
5APO|1|8|C|32||||P_1
5APO|1|8|A|33||||P_1
5APO|1|8|U|34||||P_1
5APO|1|8|C|35||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain j
- 60S ribosomal protein L37-A
Coloring options: