J6_5APO_002
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 5APO|1|5|G|2418||||P_1, 5APO|1|5|A|2799||||P_1, 5APO|1|5|A|2801||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5APO|1|5|U|2416||||P_1
5APO|1|5|U|2417||||P_1
5APO|1|5|G|2418||||P_1
5APO|1|5|A|2419||||P_1
*
5APO|1|5|U|2611||||P_1
5APO|1|5|U|2612||||P_1
5APO|1|5|U|2613||||P_1
5APO|1|5|G|2614||||P_1
*
5APO|1|5|C|2627||||P_1
5APO|1|5|A|2628||||P_1
*
5APO|1|5|U|2650||||P_1
5APO|1|5|G|2651||||P_1
5APO|1|5|U|2652||||P_1
5APO|1|5|C|2653||||P_1
*
5APO|1|5|G|2754||||P_1
5APO|1|5|C|2755||||P_1
5APO|1|5|C|2756||||P_1
5APO|1|5|U|2757||||P_1
5APO|1|5|A|2758||||P_1
5APO|1|5|U|2759||||P_1
5APO|1|5|C|2760||||P_1
5APO|1|5|G|2761||||P_1
5APO|1|5|A|2762||||P_1
5APO|1|5|U|2763||||P_1
5APO|1|5|C|2764||||P_1
5APO|1|5|C|2765||||P_1
*
5APO|1|5|G|2793||||P_1
5APO|1|5|G|2794||||P_1
5APO|1|5|U|2795||||P_1
5APO|1|5|G|2796||||P_1
5APO|1|5|C|2797||||P_1
5APO|1|5|C|2798||||P_1
5APO|1|5|A|2799||||P_1
5APO|1|5|G|2800||||P_1
5APO|1|5|A|2801||||P_1
5APO|1|5|A|2802||||P_1
5APO|1|5|A|2803||||P_1
5APO|1|5|A|2804||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain N
- 60S ribosomal protein L15-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L28
- Chain b
- 60S ribosomal protein L29
- Chain o
- 60S ribosomal protein L42-A
Coloring options: