J6_5DAT_002
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 5DAT|1|1|G|2418, 5DAT|1|1|C|2760, 5DAT|1|1|A|2799, 5DAT|1|1|A|2801, 5DAT|1|1|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DAT|1|1|U|2416
5DAT|1|1|U|2417
5DAT|1|1|G|2418
5DAT|1|1|A|2419
*
5DAT|1|1|U|2611
5DAT|1|1|U|2612
5DAT|1|1|U|2613
5DAT|1|1|G|2614
*
5DAT|1|1|C|2627
5DAT|1|1|A|2628
*
5DAT|1|1|U|2650
5DAT|1|1|G|2651
5DAT|1|1|U|2652
5DAT|1|1|C|2653
*
5DAT|1|1|G|2754
5DAT|1|1|C|2755
5DAT|1|1|C|2756
5DAT|1|1|U|2757
5DAT|1|1|A|2758
5DAT|1|1|U|2759
5DAT|1|1|C|2760
5DAT|1|1|G|2761
5DAT|1|1|A|2762
5DAT|1|1|U|2763
5DAT|1|1|C|2764
5DAT|1|1|C|2765
*
5DAT|1|1|G|2793
5DAT|1|1|G|2794
5DAT|1|1|U|2795
5DAT|1|1|G|2796
5DAT|1|1|C|2797
5DAT|1|1|C|2798
5DAT|1|1|A|2799
5DAT|1|1|G|2800
5DAT|1|1|A|2801
5DAT|1|1|A|2802
5DAT|1|1|A|2803
5DAT|1|1|A|2804
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L2
- 60S ribosomal protein L2-A
- Chain M5
- 60S ribosomal protein L15-A
- Chain M8
- 60S ribosomal protein L18-A
- Chain N1
- 60S ribosomal protein L21-A
- Chain N8
- 60S ribosomal protein L28
- Chain N9
- 60S ribosomal protein L29
- Chain Q2
- 60S ribosomal protein L42-A
Coloring options: