J6_5DAT_003

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

5DAT|1|5|A|67, 5DAT|1|5|U|329, 5DAT|1|8|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DAT|1|5|G|22
5DAT|1|5|A|23
5DAT|1|5|G|24
5DAT|1|5|U|25
5DAT|1|5|A|26
5DAT|1|5|C|27
*
5DAT|1|5|G|58
5DAT|1|5|G|59
5DAT|1|5|A|60
5DAT|1|5|A|61
5DAT|1|5|A|62
5DAT|1|5|A|63
5DAT|1|5|G|64
5DAT|1|5|A|65
5DAT|1|5|A|66
5DAT|1|5|A|67
5DAT|1|5|C|68
*
5DAT|1|5|G|75
5DAT|1|5|G|76
5DAT|1|5|A|77
5DAT|1|5|U|78
5DAT|1|5|U|79
*
5DAT|1|5|A|106
5DAT|1|5|A|107
5DAT|1|5|A|108
5DAT|1|5|A|109
5DAT|1|5|G|110
*
5DAT|1|5|C|321
5DAT|1|5|U|322
5DAT|1|5|A|323
5DAT|1|5|A|324
5DAT|1|5|A|325
5DAT|1|5|U|326
5DAT|1|5|A|327
5DAT|1|5|U|328
5DAT|1|5|U|329
5DAT|1|5|G|330
5DAT|1|5|G|331
*
5DAT|1|8|C|32
5DAT|1|8|A|33
5DAT|1|8|U|34
5DAT|1|8|C|35

Current chains

Chain 5

25S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain l4

60S ribosomal protein L4-A

Chain m3

60S ribosomal protein L13-A

Chain m5

60S ribosomal protein L15-A

Chain o5

60S ribosomal protein L35-A

Chain o6

60S ribosomal protein L36-A

Chain o7

60S ribosomal protein L37-A