J6_5DC3_001

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

5DC3|1|1|A|67, 5DC3|1|1|U|329, 5DC3|1|4|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DC3|1|1|G|22
5DC3|1|1|A|23
5DC3|1|1|G|24
5DC3|1|1|U|25
5DC3|1|1|A|26
5DC3|1|1|C|27
*
5DC3|1|1|G|58
5DC3|1|1|G|59
5DC3|1|1|A|60
5DC3|1|1|A|61
5DC3|1|1|A|62
5DC3|1|1|A|63
5DC3|1|1|G|64
5DC3|1|1|A|65
5DC3|1|1|A|66
5DC3|1|1|A|67
5DC3|1|1|C|68
*
5DC3|1|1|G|75
5DC3|1|1|G|76
5DC3|1|1|A|77
5DC3|1|1|U|78
5DC3|1|1|U|79
*
5DC3|1|1|A|106
5DC3|1|1|A|107
5DC3|1|1|A|108
5DC3|1|1|A|109
5DC3|1|1|G|110
*
5DC3|1|1|C|321
5DC3|1|1|U|322
5DC3|1|1|A|323
5DC3|1|1|A|324
5DC3|1|1|A|325
5DC3|1|1|U|326
5DC3|1|1|A|327
5DC3|1|1|U|328
5DC3|1|1|U|329
5DC3|1|1|G|330
5DC3|1|1|G|331
*
5DC3|1|4|C|32
5DC3|1|4|A|33
5DC3|1|4|U|34
5DC3|1|4|C|35

Current chains

Chain 1

25S ribosomal RNA

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain L4

60S ribosomal protein L4-A

Chain M3

60S ribosomal protein L13-A

Chain M5

60S ribosomal protein L15-A

Chain O5

60S ribosomal protein L35-A

Chain O6

60S ribosomal protein L36-A

Chain O7

60S ribosomal protein L37-A