3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC
Length
36 nucleotides
Bulged bases
5DFE|1|RA|A|223
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5DFE|1|RA|G|44
5DFE|1|RA|C|45
*
5DFE|1|RA|G|179
5DFE|1|RA|G|180
5DFE|1|RA|A|181
5DFE|1|RA|A|182
5DFE|1|RA|C|183
*
5DFE|1|RA|G|214
5DFE|1|RA|G|215
5DFE|1|RA|A|216
5DFE|1|RA|G|217
5DFE|1|RA|A|218
5DFE|1|RA|G|219
5DFE|1|RA|G|220
5DFE|1|RA|A|221
5DFE|1|RA|A|222
5DFE|1|RA|A|223
5DFE|1|RA|G|224
*
5DFE|1|RA|C|231
5DFE|1|RA|G|232
5DFE|1|RA|A|233
5DFE|1|RA|C|234
5DFE|1|RA|U|235
*
5DFE|1|RA|A|262
5DFE|1|RA|C|263
5DFE|1|RA|C|264
5DFE|1|RA|A|265
5DFE|1|RA|G|266
*
5DFE|1|RA|C|426
5DFE|1|RA|U|427
5DFE|1|RA|A|428
5DFE|1|RA|A|429
5DFE|1|RA|G|430
5DFE|1|RA|U|431
5DFE|1|RA|A|432
5DFE|1|RA|C|433

Current chains

Chain RA
T23S rRNA

Nearby chains

Chain R7
50S ribosomal protein L34

Coloring options:

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