J6_5DGF_001
3D structure
- PDB id
- 5DGF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 5DGF|1|1|A|67, 5DGF|1|1|U|329, 5DGF|1|4|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DGF|1|1|G|22
5DGF|1|1|A|23
5DGF|1|1|G|24
5DGF|1|1|U|25
5DGF|1|1|A|26
5DGF|1|1|C|27
*
5DGF|1|1|G|58
5DGF|1|1|G|59
5DGF|1|1|A|60
5DGF|1|1|A|61
5DGF|1|1|A|62
5DGF|1|1|A|63
5DGF|1|1|G|64
5DGF|1|1|A|65
5DGF|1|1|A|66
5DGF|1|1|A|67
5DGF|1|1|C|68
*
5DGF|1|1|G|75
5DGF|1|1|G|76
5DGF|1|1|A|77
5DGF|1|1|U|78
5DGF|1|1|U|79
*
5DGF|1|1|A|106
5DGF|1|1|A|107
5DGF|1|1|A|108
5DGF|1|1|A|109
5DGF|1|1|G|110
*
5DGF|1|1|C|321
5DGF|1|1|U|322
5DGF|1|1|A|323
5DGF|1|1|A|324
5DGF|1|1|A|325
5DGF|1|1|U|326
5DGF|1|1|A|327
5DGF|1|1|U|328
5DGF|1|1|U|329
5DGF|1|1|G|330
5DGF|1|1|G|331
*
5DGF|1|4|C|32
5DGF|1|4|A|33
5DGF|1|4|U|34
5DGF|1|4|C|35
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain L4
- 60S ribosomal protein L4-A
- Chain M3
- 60S ribosomal protein L13-A
- Chain M5
- 60S ribosomal protein L15-A
- Chain O5
- 60S ribosomal protein L35-A
- Chain O6
- 60S ribosomal protein L36-A
- Chain O7
- 60S ribosomal protein L37-A
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