J6_5DOX_001

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5DOX|1|1A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DOX|1|1A|G|44
5DOX|1|1A|C|45
*
5DOX|1|1A|G|179
5DOX|1|1A|G|180
5DOX|1|1A|A|181
5DOX|1|1A|A|182
5DOX|1|1A|C|183
*
5DOX|1|1A|G|214
5DOX|1|1A|G|215
5DOX|1|1A|A|216
5DOX|1|1A|G|217
5DOX|1|1A|A|218
5DOX|1|1A|G|219
5DOX|1|1A|G|220
5DOX|1|1A|A|221
5DOX|1|1A|A|222
5DOX|1|1A|A|223
5DOX|1|1A|G|224
*
5DOX|1|1A|C|231
5DOX|1|1A|G|232
5DOX|1|1A|A|233
5DOX|1|1A|C|234
5DOX|1|1A|U|235
*
5DOX|1|1A|A|262
5DOX|1|1A|C|263
5DOX|1|1A|C|264
5DOX|1|1A|A|265
5DOX|1|1A|G|266
*
5DOX|1|1A|C|426
5DOX|1|1A|U|427
5DOX|1|1A|A|428
5DOX|1|1A|A|429
5DOX|1|1A|G|430
5DOX|1|1A|U|431
5DOX|1|1A|A|432
5DOX|1|1A|C|433

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34