J6_5DOY_001
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC
- Length
- 36 nucleotides
- Bulged bases
- 5DOY|1|1A|A|223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DOY|1|1A|G|44
5DOY|1|1A|C|45
*
5DOY|1|1A|G|179
5DOY|1|1A|G|180
5DOY|1|1A|A|181
5DOY|1|1A|A|182
5DOY|1|1A|C|183
*
5DOY|1|1A|G|214
5DOY|1|1A|G|215
5DOY|1|1A|A|216
5DOY|1|1A|G|217
5DOY|1|1A|A|218
5DOY|1|1A|G|219
5DOY|1|1A|G|220
5DOY|1|1A|A|221
5DOY|1|1A|A|222
5DOY|1|1A|A|223
5DOY|1|1A|G|224
*
5DOY|1|1A|C|231
5DOY|1|1A|G|232
5DOY|1|1A|A|233
5DOY|1|1A|C|234
5DOY|1|1A|U|235
*
5DOY|1|1A|A|262
5DOY|1|1A|C|263
5DOY|1|1A|C|264
5DOY|1|1A|A|265
5DOY|1|1A|G|266
*
5DOY|1|1A|C|426
5DOY|1|1A|U|427
5DOY|1|1A|A|428
5DOY|1|1A|A|429
5DOY|1|1A|G|430
5DOY|1|1A|U|431
5DOY|1|1A|A|432
5DOY|1|1A|C|433
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S Ribosomal Protein L34
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