Loop J6_5DOY

3D structure

PDB id: 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.6 Å

Loop

Sequence: UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 5DOY|1|2A|U|2076, 5DOY|1|2A|A|2388, 5DOY|1|2A|U|2390, 5DOY|1|2A|G|2428, 5DOY|1|2A|A|2430, 5DOY|1|2A|U|2431
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5DOY|1|2A|U|2074
5DOY|1|2A|U|2075
5DOY|1|2A|U|2076
5DOY|1|2A|A|2077
*
5DOY|1|2A|U|2243
5DOY|1|2A|U|2244
5DOY|1|2A|U|2245
5DOY|1|2A|G|2246
*
5DOY|1|2A|C|2258
5DOY|1|2A|G|2259
*
5DOY|1|2A|C|2281
5DOY|1|2A|G|2282
5DOY|1|2A|C|2283
5DOY|1|2A|C|2284
*
5DOY|1|2A|G|2384
5DOY|1|2A|C|2385
5DOY|1|2A|C|2386
5DOY|1|2A|U|2387
5DOY|1|2A|A|2388
5DOY|1|2A|G|2389
5DOY|1|2A|U|2390
5DOY|1|2A|G|2391
5DOY|1|2A|A|2392
5DOY|1|2A|A|2393
5DOY|1|2A|C|2394
5DOY|1|2A|C|2395
*
5DOY|1|2A|G|2421
5DOY|1|2A|A|2422
5DOY|1|2A|U|2423
5DOY|1|2A|C|2424
5DOY|1|2A|A|2425
5DOY|1|2A|A|2426
5DOY|1|2A|C|2427
5DOY|1|2A|G|2428
5DOY|1|2A|G|2429
5DOY|1|2A|A|2430
5DOY|1|2A|U|2431
5DOY|1|2A|A|2432
5DOY|1|2A|A|2433
5DOY|1|2A|A|2434
5DOY|1|2A|A|2435

Current chains

Chain 2A: 23S Ribosomal RNA

Nearby chains

Chain 20: 50S Ribosomal Protein L27
Chain 21: 50S Ribosomal Protein L28
Chain 26: 50S Ribosomal Protein L33
Chain 28: 50S Ribosomal Protein L35
Chain 2D: 50S Ribosomal Protein L2
Chain 2P: 50S Ribosomal Protein L15
Chain 2y: Transfer RNA; tRNA

J6_5DOY_004