J6_5E81_001

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5E81|1|14|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5E81|1|14|G|45
5E81|1|14|C|46
*
5E81|1|14|G|179
5E81|1|14|G|180
5E81|1|14|A|181
5E81|1|14|A|182
5E81|1|14|C|183
*
5E81|1|14|G|214
5E81|1|14|G|215
5E81|1|14|A|216
5E81|1|14|G|217
5E81|1|14|A|218
5E81|1|14|G|219
5E81|1|14|G|220
5E81|1|14|A|221
5E81|1|14|A|222
5E81|1|14|A|223
5E81|1|14|G|224
*
5E81|1|14|C|231
5E81|1|14|G|232
5E81|1|14|A|233
5E81|1|14|C|234
5E81|1|14|U|235
*
5E81|1|14|A|262
5E81|1|14|C|263
5E81|1|14|C|264
5E81|1|14|A|265
5E81|1|14|G|266
*
5E81|1|14|C|426
5E81|1|14|U|427
5E81|1|14|A|428
5E81|1|14|A|429
5E81|1|14|G|430
5E81|1|14|U|431
5E81|1|14|A|432
5E81|1|14|C|433

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L34