J6_5EL6_003

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5EL6|1|1H|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL6|1|1H|G|45
5EL6|1|1H|C|46
*
5EL6|1|1H|G|179
5EL6|1|1H|G|180
5EL6|1|1H|A|181
5EL6|1|1H|A|182
5EL6|1|1H|C|183
*
5EL6|1|1H|G|214
5EL6|1|1H|G|215
5EL6|1|1H|A|216
5EL6|1|1H|G|217
5EL6|1|1H|A|218
5EL6|1|1H|G|219
5EL6|1|1H|G|220
5EL6|1|1H|A|221
5EL6|1|1H|A|222
5EL6|1|1H|A|223
5EL6|1|1H|G|224
*
5EL6|1|1H|C|231
5EL6|1|1H|G|232
5EL6|1|1H|A|233
5EL6|1|1H|C|234
5EL6|1|1H|U|235
*
5EL6|1|1H|A|262
5EL6|1|1H|C|263
5EL6|1|1H|C|264
5EL6|1|1H|A|265
5EL6|1|1H|G|266
*
5EL6|1|1H|C|426
5EL6|1|1H|U|427
5EL6|1|1H|A|428
5EL6|1|1H|A|429
5EL6|1|1H|G|430
5EL6|1|1H|U|431
5EL6|1|1H|A|432
5EL6|1|1H|C|433

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain P8

50S ribosomal protein L34