J6_5EL7_001

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5EL7|1|14|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL7|1|14|G|45
5EL7|1|14|C|46
*
5EL7|1|14|G|179
5EL7|1|14|G|180
5EL7|1|14|A|181
5EL7|1|14|A|182
5EL7|1|14|C|183
*
5EL7|1|14|G|214
5EL7|1|14|G|215
5EL7|1|14|A|216
5EL7|1|14|G|217
5EL7|1|14|A|218
5EL7|1|14|G|219
5EL7|1|14|G|220
5EL7|1|14|A|221
5EL7|1|14|A|222
5EL7|1|14|A|223
5EL7|1|14|G|224
*
5EL7|1|14|C|231
5EL7|1|14|G|232
5EL7|1|14|A|233
5EL7|1|14|C|234
5EL7|1|14|U|235
*
5EL7|1|14|A|262
5EL7|1|14|C|263
5EL7|1|14|C|264
5EL7|1|14|A|265
5EL7|1|14|G|266
*
5EL7|1|14|C|426
5EL7|1|14|U|427
5EL7|1|14|A|428
5EL7|1|14|A|429
5EL7|1|14|G|430
5EL7|1|14|U|431
5EL7|1|14|A|432
5EL7|1|14|C|433

Current chains

Chain 14

23S rRNA

Nearby chains

Chain L5

50S ribosomal protein L34