J6_5F8K_003

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5F8K|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5F8K|1|2A|G|44
5F8K|1|2A|C|45
*
5F8K|1|2A|G|179
5F8K|1|2A|G|180
5F8K|1|2A|A|181
5F8K|1|2A|A|182
5F8K|1|2A|C|183
*
5F8K|1|2A|G|214
5F8K|1|2A|G|215
5F8K|1|2A|A|216
5F8K|1|2A|G|217
5F8K|1|2A|A|218
5F8K|1|2A|G|219
5F8K|1|2A|G|220
5F8K|1|2A|A|221
5F8K|1|2A|A|222
5F8K|1|2A|A|223
5F8K|1|2A|G|224
*
5F8K|1|2A|C|231
5F8K|1|2A|G|232
5F8K|1|2A|A|233
5F8K|1|2A|C|234
5F8K|1|2A|U|235
*
5F8K|1|2A|A|262
5F8K|1|2A|C|263
5F8K|1|2A|C|264
5F8K|1|2A|A|265
5F8K|1|2A|G|266
*
5F8K|1|2A|C|426
5F8K|1|2A|U|427
5F8K|1|2A|A|428
5F8K|1|2A|A|429
5F8K|1|2A|G|430
5F8K|1|2A|U|431
5F8K|1|2A|A|432
5F8K|1|2A|C|433

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34