J6_5FCI_002

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC

Length

42 nucleotides

Bulged bases

5FCI|1|5|A|67, 5FCI|1|5|U|329, 5FCI|1|8|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FCI|1|5|G|22
5FCI|1|5|A|23
5FCI|1|5|G|24
5FCI|1|5|U|25
5FCI|1|5|A|26
5FCI|1|5|C|27
*
5FCI|1|5|G|58
5FCI|1|5|G|59
5FCI|1|5|A|60
5FCI|1|5|A|61
5FCI|1|5|A|62
5FCI|1|5|A|63
5FCI|1|5|G|64
5FCI|1|5|A|65
5FCI|1|5|A|66
5FCI|1|5|A|67
5FCI|1|5|C|68
*
5FCI|1|5|G|75
5FCI|1|5|G|76
5FCI|1|5|A|77
5FCI|1|5|U|78
5FCI|1|5|U|79
*
5FCI|1|5|A|106
5FCI|1|5|A|107
5FCI|1|5|A|108
5FCI|1|5|A|109
5FCI|1|5|G|110
*
5FCI|1|5|C|321
5FCI|1|5|U|322
5FCI|1|5|A|323
5FCI|1|5|A|324
5FCI|1|5|A|325
5FCI|1|5|U|326
5FCI|1|5|A|327
5FCI|1|5|U|328
5FCI|1|5|U|329
5FCI|1|5|G|330
5FCI|1|5|G|331
*
5FCI|1|8|C|32
5FCI|1|8|A|33
5FCI|1|8|U|34
5FCI|1|8|C|35

Current chains

Chain 5

25S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain l4

60S ribosomal protein L4-A

Chain m3

60S ribosomal protein L13-A

Chain m5

60S ribosomal protein L15-A

Chain o5

60S ribosomal protein L35-A

Chain o6

60S ribosomal protein L36-A

Chain o7

60S ribosomal protein L37-A