J6_5FDU_001

3D structure

PDB id

5FDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5FDU|1|1A|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDU|1|1A|G|44
5FDU|1|1A|C|45
*
5FDU|1|1A|G|168
5FDU|1|1A|G|169
5FDU|1|1A|A|170
5FDU|1|1A|A|171
5FDU|1|1A|C|172
*
5FDU|1|1A|G|203
5FDU|1|1A|G|204
5FDU|1|1A|A|205
5FDU|1|1A|G|206
5FDU|1|1A|A|207
5FDU|1|1A|G|208
5FDU|1|1A|G|209
5FDU|1|1A|A|210
5FDU|1|1A|A|211
5FDU|1|1A|A|212
5FDU|1|1A|G|213
*
5FDU|1|1A|C|220
5FDU|1|1A|G|221
5FDU|1|1A|A|222
5FDU|1|1A|C|223
5FDU|1|1A|U|224
*
5FDU|1|1A|A|251
5FDU|1|1A|C|252
5FDU|1|1A|C|253
5FDU|1|1A|A|254
5FDU|1|1A|G|255
*
5FDU|1|1A|C|453
5FDU|1|1A|U|454
5FDU|1|1A|A|455
5FDU|1|1A|A|456
5FDU|1|1A|G|457
5FDU|1|1A|U|458
5FDU|1|1A|A|459
5FDU|1|1A|C|460

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34