3D structure

PDB id
5FDU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC
Length
36 nucleotides
Bulged bases
5FDU|1|2A|A|223
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5FDU|1|2A|G|44
5FDU|1|2A|C|45
*
5FDU|1|2A|G|179
5FDU|1|2A|G|180
5FDU|1|2A|A|181
5FDU|1|2A|A|182
5FDU|1|2A|C|183
*
5FDU|1|2A|G|214
5FDU|1|2A|G|215
5FDU|1|2A|A|216
5FDU|1|2A|G|217
5FDU|1|2A|A|218
5FDU|1|2A|G|219
5FDU|1|2A|G|220
5FDU|1|2A|A|221
5FDU|1|2A|A|222
5FDU|1|2A|A|223
5FDU|1|2A|G|224
*
5FDU|1|2A|C|231
5FDU|1|2A|G|232
5FDU|1|2A|A|233
5FDU|1|2A|C|234
5FDU|1|2A|U|235
*
5FDU|1|2A|A|262
5FDU|1|2A|C|263
5FDU|1|2A|C|264
5FDU|1|2A|A|265
5FDU|1|2A|G|266
*
5FDU|1|2A|C|426
5FDU|1|2A|U|427
5FDU|1|2A|A|428
5FDU|1|2A|A|429
5FDU|1|2A|G|430
5FDU|1|2A|U|431
5FDU|1|2A|A|432
5FDU|1|2A|C|433

Current chains

Chain 2A
23S ribosomal RNA

Nearby chains

Chain 27
50S ribosomal protein L34

Coloring options:

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