J6_5FDV_002
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 5FDV|1|1A|U|2098, 5FDV|1|1A|A|2400, 5FDV|1|1A|U|2402, 5FDV|1|1A|G|2440, 5FDV|1|1A|A|2442, 5FDV|1|1A|U|2443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5FDV|1|1A|U|2096
5FDV|1|1A|U|2097
5FDV|1|1A|U|2098
5FDV|1|1A|A|2099
*
5FDV|1|1A|U|2255
5FDV|1|1A|U|2256
5FDV|1|1A|U|2257
5FDV|1|1A|G|2258
*
5FDV|1|1A|C|2270
5FDV|1|1A|G|2271
*
5FDV|1|1A|C|2293
5FDV|1|1A|G|2294
5FDV|1|1A|C|2295
5FDV|1|1A|C|2296
*
5FDV|1|1A|G|2396
5FDV|1|1A|C|2397
5FDV|1|1A|C|2398
5FDV|1|1A|U|2399
5FDV|1|1A|A|2400
5FDV|1|1A|G|2401
5FDV|1|1A|U|2402
5FDV|1|1A|G|2403
5FDV|1|1A|A|2404
5FDV|1|1A|A|2405
5FDV|1|1A|C|2406
5FDV|1|1A|C|2407
*
5FDV|1|1A|G|2433
5FDV|1|1A|A|2434
5FDV|1|1A|U|2435
5FDV|1|1A|C|2436
5FDV|1|1A|A|2437
5FDV|1|1A|A|2438
5FDV|1|1A|C|2439
5FDV|1|1A|G|2440
5FDV|1|1A|G|2441
5FDV|1|1A|A|2442
5FDV|1|1A|U|2443
5FDV|1|1A|A|2444
5FDV|1|1A|A|2445
5FDV|1|1A|A|2446
5FDV|1|1A|A|2447
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 11
- 50S ribosomal protein L28
- Chain 16
- 50S ribosomal protein L33
- Chain 18
- 50S ribosomal protein L35
- Chain 1D
- 50S ribosomal protein L2
- Chain 1P
- 50S ribosomal protein L15
- Chain 1Z
- 50S ribosomal protein L25
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