J6_5FDV_003

3D structure

PDB id

5FDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5FDV|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5FDV|1|2A|G|44
5FDV|1|2A|C|45
*
5FDV|1|2A|G|179
5FDV|1|2A|G|180
5FDV|1|2A|A|181
5FDV|1|2A|A|182
5FDV|1|2A|C|183
*
5FDV|1|2A|G|214
5FDV|1|2A|G|215
5FDV|1|2A|A|216
5FDV|1|2A|G|217
5FDV|1|2A|A|218
5FDV|1|2A|G|219
5FDV|1|2A|G|220
5FDV|1|2A|A|221
5FDV|1|2A|A|222
5FDV|1|2A|A|223
5FDV|1|2A|G|224
*
5FDV|1|2A|C|231
5FDV|1|2A|G|232
5FDV|1|2A|A|233
5FDV|1|2A|C|234
5FDV|1|2A|U|235
*
5FDV|1|2A|A|262
5FDV|1|2A|C|263
5FDV|1|2A|C|264
5FDV|1|2A|A|265
5FDV|1|2A|G|266
*
5FDV|1|2A|C|426
5FDV|1|2A|U|427
5FDV|1|2A|A|428
5FDV|1|2A|A|429
5FDV|1|2A|G|430
5FDV|1|2A|U|431
5FDV|1|2A|A|432
5FDV|1|2A|C|433

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34