RNA 3D Hub //

J6_5FL8_002

3D structure

PDB id
5FL8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
AAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGUAAC*GGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGCG*UGUUGUAGACGGCCUUGGUAGG*CCGUCGCUUGCUACAAUUAACGAUCAACUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUGGUCAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUG*UAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUC*GACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUAUCUACUAU
Length
343 nucleotides
Bulged bases
5FL8|1|x|A|1901, 5FL8|1|x|U|1931, 5FL8|1|x|U|2056, 5FL8|1|x|A|2060, 5FL8|1|x|G|2076, 5FL8|1|x|U|2077, 5FL8|1|x|A|2089, 5FL8|1|x|A|2093, 5FL8|1|x|G|2111, 5FL8|1|x|U|2112, 5FL8|1|x|G|2116, 5FL8|1|x|G|2121, 5FL8|1|x|A|2138, 5FL8|1|x|A|2139, 5FL8|1|x|U|2140, 5FL8|1|x|U|2141, 5FL8|1|x|A|2144, 5FL8|1|x|G|2157, 5FL8|1|x|U|2159, 5FL8|1|x|G|2169, 5FL8|1|x|U|2175, 5FL8|1|x|A|2178, 5FL8|1|x|C|2179, 5FL8|1|x|U|2193, 5FL8|1|x|A|2243, 5FL8|1|x|G|2249, 5FL8|1|x|A|2255, 5FL8|1|x|A|2256, 5FL8|1|x|A|2259, 5FL8|1|x|U|2268, 5FL8|1|x|U|2269, 5FL8|1|x|A|2270, 5FL8|1|x|A|2271, 5FL8|1|x|G|2272, 5FL8|1|x|G|2273, 5FL8|1|x|U|2274, 5FL8|1|x|A|2281, 5FL8|1|x|C|2287, 5FL8|1|x|G|2288, 5FL8|1|x|C|2306, 5FL8|1|x|A|2312, 5FL8|1|x|G|2315, 5FL8|1|x|G|2316, 5FL8|1|x|A|2317, 5FL8|1|x|U|2318, 5FL8|1|x|U|2319, 5FL8|1|x|A|2324
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5FL8|1|x|A|1883
5FL8|1|x|A|1884
5FL8|1|x|U|1885
5FL8|1|x|A|1886
5FL8|1|x|A|1887
5FL8|1|x|U|1888
5FL8|1|x|G|1889
5FL8|1|x|U|1890
5FL8|1|x|A|1891
5FL8|1|x|G|1892
5FL8|1|x|A|1893
5FL8|1|x|U|1894
5FL8|1|x|A|1895
5FL8|1|x|A|1896
5FL8|1|x|G|1897
5FL8|1|x|G|1898
5FL8|1|x|G|1899
5FL8|1|x|A|1900
5FL8|1|x|A|1901
5FL8|1|x|G|1902
5FL8|1|x|U|1903
5FL8|1|x|C|1904
5FL8|1|x|G|1905
5FL8|1|x|G|1906
5FL8|1|x|C|1907
5FL8|1|x|A|1908
5FL8|1|x|A|1909
5FL8|1|x|A|1910
5FL8|1|x|A|1911
5FL8|1|x|U|1912
5FL8|1|x|A|1913
5FL8|1|x|G|1914
5FL8|1|x|A|1915
5FL8|1|x|U|1916
5FL8|1|x|C|1917
5FL8|1|x|C|1918
5FL8|1|x|G|1919
5FL8|1|x|U|1920
5FL8|1|x|A|1921
5FL8|1|x|A|1922
5FL8|1|x|C|1923
*
5FL8|1|x|G|1928
5FL8|1|x|G|1929
5FL8|1|x|A|1930
5FL8|1|x|U|1931
5FL8|1|x|A|1932
5FL8|1|x|A|1933
5FL8|1|x|G|1934
5FL8|1|x|G|1935
5FL8|1|x|A|1936
5FL8|1|x|U|1937
5FL8|1|x|U|1938
5FL8|1|x|G|1939
5FL8|1|x|G|1940
5FL8|1|x|C|1941
5FL8|1|x|U|1942
5FL8|1|x|C|1943
5FL8|1|x|U|1944
5FL8|1|x|A|1945
5FL8|1|x|A|1946
5FL8|1|x|G|1947
5FL8|1|x|G|1948
5FL8|1|x|G|1949
5FL8|1|x|U|1950
5FL8|1|x|C|1951
5FL8|1|x|G|1952
5FL8|1|x|G|1953
5FL8|1|x|G|1954
5FL8|1|x|U|1955
5FL8|1|x|A|1956
5FL8|1|x|G|1957
5FL8|1|x|U|1958
5FL8|1|x|G|1959
5FL8|1|x|A|1960
5FL8|1|x|G|1961
5FL8|1|x|G|1962
5FL8|1|x|G|1963
5FL8|1|x|C|1964
5FL8|1|x|C|1965
5FL8|1|x|U|1966
5FL8|1|x|U|1967
5FL8|1|x|G|1968
5FL8|1|x|G|1969
5FL8|1|x|U|1970
5FL8|1|x|C|1971
5FL8|1|x|A|1972
5FL8|1|x|G|1973
5FL8|1|x|A|1974
5FL8|1|x|C|1975
5FL8|1|x|G|1976
5FL8|1|x|C|1977
5FL8|1|x|A|1978
5FL8|1|x|G|1979
5FL8|1|x|C|1980
5FL8|1|x|G|1981
*
5FL8|1|x|U|2041
5FL8|1|x|G|2042
5FL8|1|x|U|2043
5FL8|1|x|U|2044
5FL8|1|x|G|2045
5FL8|1|x|U|2046
5FL8|1|x|A|2047
5FL8|1|x|G|2048
5FL8|1|x|A|2049
5FL8|1|x|C|2050
5FL8|1|x|G|2051
5FL8|1|x|G|2052
5FL8|1|x|C|2053
5FL8|1|x|C|2054
5FL8|1|x|U|2055
5FL8|1|x|U|2056
5FL8|1|x|G|2057
5FL8|1|x|G|2058
5FL8|1|x|U|2059
5FL8|1|x|A|2060
5FL8|1|x|G|2061
5FL8|1|x|G|2062
*
5FL8|1|x|C|2074
5FL8|1|x|C|2075
5FL8|1|x|G|2076
5FL8|1|x|U|2077
5FL8|1|x|C|2078
5FL8|1|x|G|2079
5FL8|1|x|C|2080
5FL8|1|x|U|2081
5FL8|1|x|U|2082
5FL8|1|x|G|2083
5FL8|1|x|C|2084
5FL8|1|x|U|2085
5FL8|1|x|A|2086
5FL8|1|x|C|2087
5FL8|1|x|A|2088
5FL8|1|x|A|2089
5FL8|1|x|U|2090
5FL8|1|x|U|2091
5FL8|1|x|A|2092
5FL8|1|x|A|2093
5FL8|1|x|C|2094
5FL8|1|x|G|2095
5FL8|1|x|A|2096
5FL8|1|x|U|2097
5FL8|1|x|C|2098
5FL8|1|x|A|2099
5FL8|1|x|A|2100
5FL8|1|x|C|2101
5FL8|1|x|U|2102
5FL8|1|x|U|2103
5FL8|1|x|A|2104
5FL8|1|x|G|2105
5FL8|1|x|A|2106
5FL8|1|x|A|2107
5FL8|1|x|C|2108
5FL8|1|x|U|2109
5FL8|1|x|G|2110
5FL8|1|x|G|2111
5FL8|1|x|U|2112
5FL8|1|x|A|2113
5FL8|1|x|C|2114
5FL8|1|x|G|2115
5FL8|1|x|G|2116
5FL8|1|x|A|2117
5FL8|1|x|C|2118
5FL8|1|x|A|2119
5FL8|1|x|A|2120
5FL8|1|x|G|2121
5FL8|1|x|G|2122
5FL8|1|x|G|2123
5FL8|1|x|G|2124
5FL8|1|x|A|2125
5FL8|1|x|A|2126
5FL8|1|x|U|2127
5FL8|1|x|C|2128
5FL8|1|x|U|2129
5FL8|1|x|G|2130
5FL8|1|x|A|2131
5FL8|1|x|C|2132
5FL8|1|x|U|2133
5FL8|1|x|G|2134
5FL8|1|x|U|2135
5FL8|1|x|C|2136
5FL8|1|x|U|2137
5FL8|1|x|A|2138
5FL8|1|x|A|2139
5FL8|1|x|U|2140
5FL8|1|x|U|2141
5FL8|1|x|A|2142
5FL8|1|x|A|2143
5FL8|1|x|A|2144
5FL8|1|x|A|2145
5FL8|1|x|C|2146
5FL8|1|x|A|2147
5FL8|1|x|U|2148
5FL8|1|x|A|2149
5FL8|1|x|G|2150
5FL8|1|x|C|2151
5FL8|1|x|A|2152
5FL8|1|x|U|2153
5FL8|1|x|U|2154
5FL8|1|x|G|2155
5FL8|1|x|C|2156
5FL8|1|x|G|2157
5FL8|1|x|A|2158
5FL8|1|x|U|2159
5FL8|1|x|G|2160
5FL8|1|x|G|2161
5FL8|1|x|U|2162
5FL8|1|x|C|2163
5FL8|1|x|A|2164
5FL8|1|x|G|2165
5FL8|1|x|A|2166
5FL8|1|x|A|2167
5FL8|1|x|A|2168
5FL8|1|x|G|2169
5FL8|1|x|U|2170
5FL8|1|x|G|2171
5FL8|1|x|A|2172
5FL8|1|x|U|2173
5FL8|1|x|G|2174
5FL8|1|x|U|2175
5FL8|1|x|U|2176
5FL8|1|x|G|2177
5FL8|1|x|A|2178
5FL8|1|x|C|2179
5FL8|1|x|G|2180
5FL8|1|x|C|2181
5FL8|1|x|A|2182
5FL8|1|x|A|2183
5FL8|1|x|U|2184
5FL8|1|x|G|2185
5FL8|1|x|U|2186
5FL8|1|x|G|2187
5FL8|1|x|A|2188
5FL8|1|x|U|2189
5FL8|1|x|U|2190
5FL8|1|x|U|2191
5FL8|1|x|C|2192
5FL8|1|x|U|2193
5FL8|1|x|G|2194
5FL8|1|x|C|2195
5FL8|1|x|C|2196
5FL8|1|x|C|2197
5FL8|1|x|A|2198
5FL8|1|x|G|2199
5FL8|1|x|U|2200
5FL8|1|x|G|2201
*
5FL8|1|x|U|2241
5FL8|1|x|A|2242
5FL8|1|x|A|2243
5FL8|1|x|A|2244
5FL8|1|x|C|2245
5FL8|1|x|G|2246
5FL8|1|x|G|2247
5FL8|1|x|C|2248
5FL8|1|x|G|2249
5FL8|1|x|G|2250
5FL8|1|x|G|2251
5FL8|1|x|A|2252
5FL8|1|x|G|2253
5FL8|1|x|U|2254
5FL8|1|x|A|2255
5FL8|1|x|A|2256
5FL8|1|x|C|2257
5FL8|1|x|U|2258
5FL8|1|x|A|2259
5FL8|1|x|U|2260
5FL8|1|x|G|2261
5FL8|1|x|A|2262
5FL8|1|x|C|2263
5FL8|1|x|U|2264
5FL8|1|x|C|2265
5FL8|1|x|U|2266
5FL8|1|x|C|2267
5FL8|1|x|U|2268
5FL8|1|x|U|2269
5FL8|1|x|A|2270
5FL8|1|x|A|2271
5FL8|1|x|G|2272
5FL8|1|x|G|2273
5FL8|1|x|U|2274
5FL8|1|x|A|2275
5FL8|1|x|G|2276
5FL8|1|x|C|2277
5FL8|1|x|C|2278
5FL8|1|x|A|2279
5FL8|1|x|A|2280
5FL8|1|x|A|2281
5FL8|1|x|U|2282
5FL8|1|x|G|2283
5FL8|1|x|C|2284
5FL8|1|x|C|2285
5FL8|1|x|U|2286
5FL8|1|x|C|2287
5FL8|1|x|G|2288
5FL8|1|x|U|2289
5FL8|1|x|C|2290
*
5FL8|1|x|G|2302
5FL8|1|x|A|2303
5FL8|1|x|C|2304
5FL8|1|x|G|2305
5FL8|1|x|C|2306
5FL8|1|x|G|2307
5FL8|1|x|C|2308
5FL8|1|x|A|2309
5FL8|1|x|U|2310
5FL8|1|x|G|2311
5FL8|1|x|A|2312
5FL8|1|x|A|2313
5FL8|1|x|U|2314
5FL8|1|x|G|2315
5FL8|1|x|G|2316
5FL8|1|x|A|2317
5FL8|1|x|U|2318
5FL8|1|x|U|2319
5FL8|1|x|A|2320
5FL8|1|x|A|2321
5FL8|1|x|C|2322
5FL8|1|x|G|2323
5FL8|1|x|A|2324
5FL8|1|x|G|2325
5FL8|1|x|A|2326
5FL8|1|x|U|2327
5FL8|1|x|U|2328
5FL8|1|x|C|2329
5FL8|1|x|C|2330
5FL8|1|x|C|2331
5FL8|1|x|A|2332
5FL8|1|x|C|2333
5FL8|1|x|U|2334
5FL8|1|x|G|2335
5FL8|1|x|U|2336
5FL8|1|x|C|2337
5FL8|1|x|C|2338
5FL8|1|x|C|2339
5FL8|1|x|U|2340
5FL8|1|x|A|2341
5FL8|1|x|U|2342
5FL8|1|x|C|2343
5FL8|1|x|U|2344
5FL8|1|x|A|2345
5FL8|1|x|C|2346
5FL8|1|x|U|2347
5FL8|1|x|A|2348
5FL8|1|x|U|2349

Current chains

Chain x
25S ribosomal RNA

Nearby chains

Chain A
60S ribosomal protein L2-A
Chain B
60S ribosomal protein L3
Chain N
60S ribosomal protein L15-A
Chain P
60S ribosomal protein L17-A
Chain R
60S ribosomal protein L19-A
Chain V
60S ribosomal protein L23-A
Chain d
60S ribosomal protein L31-A
Chain j
60S ribosomal protein L37-A
Chain k
60S ribosomal protein L38
Chain p
60S ribosomal protein L43-A
Chain r
Protein SDA1
Chain t
Ribosome biogenesis protein RLP24

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 4.4292 s