J6_5GAD_001

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5GAD|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAD|1|A|G|45
5GAD|1|A|G|46
*
5GAD|1|A|C|179
5GAD|1|A|G|180
5GAD|1|A|A|181
5GAD|1|A|A|182
5GAD|1|A|C|183
*
5GAD|1|A|G|214
5GAD|1|A|G|215
5GAD|1|A|A|216
5GAD|1|A|A|217
5GAD|1|A|A|218
5GAD|1|A|A|219
5GAD|1|A|G|220
5GAD|1|A|A|221
5GAD|1|A|A|222
5GAD|1|A|A|223
5GAD|1|A|U|224
*
5GAD|1|A|A|231
5GAD|1|A|G|232
5GAD|1|A|A|233
5GAD|1|A|U|234
5GAD|1|A|U|235
*
5GAD|1|A|A|262
5GAD|1|A|G|263
5GAD|1|A|C|264
5GAD|1|A|A|265
5GAD|1|A|G|266
*
5GAD|1|A|C|426
5GAD|1|A|U|427
5GAD|1|A|A|428
5GAD|1|A|A|429
5GAD|1|A|A|430
5GAD|1|A|U|431
5GAD|1|A|A|432
5GAD|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34