J6_5GAF_001

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5GAF|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAF|1|A|G|45
5GAF|1|A|G|46
*
5GAF|1|A|C|179
5GAF|1|A|G|180
5GAF|1|A|A|181
5GAF|1|A|A|182
5GAF|1|A|C|183
*
5GAF|1|A|G|214
5GAF|1|A|G|215
5GAF|1|A|A|216
5GAF|1|A|A|217
5GAF|1|A|A|218
5GAF|1|A|A|219
5GAF|1|A|G|220
5GAF|1|A|A|221
5GAF|1|A|A|222
5GAF|1|A|A|223
5GAF|1|A|U|224
*
5GAF|1|A|A|231
5GAF|1|A|G|232
5GAF|1|A|A|233
5GAF|1|A|U|234
5GAF|1|A|U|235
*
5GAF|1|A|A|262
5GAF|1|A|G|263
5GAF|1|A|C|264
5GAF|1|A|A|265
5GAF|1|A|G|266
*
5GAF|1|A|C|426
5GAF|1|A|U|427
5GAF|1|A|A|428
5GAF|1|A|A|429
5GAF|1|A|A|430
5GAF|1|A|U|431
5GAF|1|A|A|432
5GAF|1|A|C|433

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34