J6_5GAG_001

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5GAG|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAG|1|A|G|45
5GAG|1|A|G|46
*
5GAG|1|A|C|179
5GAG|1|A|G|180
5GAG|1|A|A|181
5GAG|1|A|A|182
5GAG|1|A|C|183
*
5GAG|1|A|G|214
5GAG|1|A|G|215
5GAG|1|A|A|216
5GAG|1|A|A|217
5GAG|1|A|A|218
5GAG|1|A|A|219
5GAG|1|A|G|220
5GAG|1|A|A|221
5GAG|1|A|A|222
5GAG|1|A|A|223
5GAG|1|A|U|224
*
5GAG|1|A|A|231
5GAG|1|A|G|232
5GAG|1|A|A|233
5GAG|1|A|U|234
5GAG|1|A|U|235
*
5GAG|1|A|A|262
5GAG|1|A|G|263
5GAG|1|A|C|264
5GAG|1|A|A|265
5GAG|1|A|G|266
*
5GAG|1|A|C|426
5GAG|1|A|U|427
5GAG|1|A|A|428
5GAG|1|A|A|429
5GAG|1|A|A|430
5GAG|1|A|U|431
5GAG|1|A|A|432
5GAG|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34