J6_5GAH_001

3D structure

PDB id

5GAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP with detached NG domain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5GAH|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAH|1|A|G|45
5GAH|1|A|G|46
*
5GAH|1|A|C|179
5GAH|1|A|G|180
5GAH|1|A|A|181
5GAH|1|A|A|182
5GAH|1|A|C|183
*
5GAH|1|A|G|214
5GAH|1|A|G|215
5GAH|1|A|A|216
5GAH|1|A|A|217
5GAH|1|A|A|218
5GAH|1|A|A|219
5GAH|1|A|G|220
5GAH|1|A|A|221
5GAH|1|A|A|222
5GAH|1|A|A|223
5GAH|1|A|U|224
*
5GAH|1|A|A|231
5GAH|1|A|G|232
5GAH|1|A|A|233
5GAH|1|A|U|234
5GAH|1|A|U|235
*
5GAH|1|A|A|262
5GAH|1|A|G|263
5GAH|1|A|C|264
5GAH|1|A|A|265
5GAH|1|A|G|266
*
5GAH|1|A|C|426
5GAH|1|A|U|427
5GAH|1|A|A|428
5GAH|1|A|A|429
5GAH|1|A|A|430
5GAH|1|A|U|431
5GAH|1|A|A|432
5GAH|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34