J6_5H4P_001
3D structure
- PDB id
- 5H4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 5H4P|1|1|A|67, 5H4P|1|1|U|329, 5H4P|1|4|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5H4P|1|1|G|22
5H4P|1|1|A|23
5H4P|1|1|G|24
5H4P|1|1|U|25
5H4P|1|1|A|26
5H4P|1|1|C|27
*
5H4P|1|1|G|58
5H4P|1|1|G|59
5H4P|1|1|A|60
5H4P|1|1|A|61
5H4P|1|1|A|62
5H4P|1|1|A|63
5H4P|1|1|G|64
5H4P|1|1|A|65
5H4P|1|1|A|66
5H4P|1|1|A|67
5H4P|1|1|C|68
*
5H4P|1|1|G|75
5H4P|1|1|G|76
5H4P|1|1|A|77
5H4P|1|1|U|78
5H4P|1|1|U|79
*
5H4P|1|1|A|106
5H4P|1|1|A|107
5H4P|1|1|A|108
5H4P|1|1|A|109
5H4P|1|1|G|110
*
5H4P|1|1|C|321
5H4P|1|1|U|322
5H4P|1|1|A|323
5H4P|1|1|A|324
5H4P|1|1|A|325
5H4P|1|1|U|326
5H4P|1|1|A|327
5H4P|1|1|U|328
5H4P|1|1|U|329
5H4P|1|1|G|330
5H4P|1|1|G|331
*
5H4P|1|4|C|32
5H4P|1|4|A|33
5H4P|1|4|U|34
5H4P|1|4|C|35
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain j
- 60S ribosomal protein L37-A
Coloring options: