J6_5H5U_001

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

5H5U|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5H5U|1|A|G|45
5H5U|1|A|G|46
*
5H5U|1|A|C|179
5H5U|1|A|G|180
5H5U|1|A|A|181
5H5U|1|A|A|182
5H5U|1|A|C|183
*
5H5U|1|A|G|214
5H5U|1|A|G|215
5H5U|1|A|A|216
5H5U|1|A|A|217
5H5U|1|A|A|218
5H5U|1|A|A|219
5H5U|1|A|G|220
5H5U|1|A|A|221
5H5U|1|A|A|222
5H5U|1|A|A|223
5H5U|1|A|U|224
*
5H5U|1|A|A|231
5H5U|1|A|G|232
5H5U|1|A|A|233
5H5U|1|A|U|234
5H5U|1|A|U|235
*
5H5U|1|A|A|262
5H5U|1|A|G|263
5H5U|1|A|C|264
5H5U|1|A|A|265
5H5U|1|A|G|266
*
5H5U|1|A|C|426
5H5U|1|A|U|427
5H5U|1|A|A|428
5H5U|1|A|A|429
5H5U|1|A|A|430
5H5U|1|A|U|431
5H5U|1|A|A|432
5H5U|1|A|C|433

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34