J6_5H5U_002
3D structure
- PDB id
- 5H5U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mechanistic insights into the alternative translation termination by ArfA and RF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 5H5U|1|A|U|2076, 5H5U|1|A|A|2388, 5H5U|1|A|U|2390, 5H5U|1|A|G|2428, 5H5U|1|A|A|2430||A, 5H5U|1|A|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5H5U|1|A|U|2074
5H5U|1|A|U|2075
5H5U|1|A|U|2076
5H5U|1|A|A|2077
*
5H5U|1|A|U|2243
5H5U|1|A|U|2244
5H5U|1|A|U|2245
5H5U|1|A|G|2246
*
5H5U|1|A|C|2258
5H5U|1|A|U|2259
*
5H5U|1|A|A|2281
5H5U|1|A|G|2282
5H5U|1|A|C|2283
5H5U|1|A|A|2284
*
5H5U|1|A|U|2384
5H5U|1|A|C|2385
5H5U|1|A|A|2386
5H5U|1|A|U|2387
5H5U|1|A|A|2388
5H5U|1|A|G|2389
5H5U|1|A|U|2390
5H5U|1|A|G|2391
5H5U|1|A|A|2392
5H5U|1|A|U|2393
5H5U|1|A|C|2394
5H5U|1|A|C|2395
*
5H5U|1|A|G|2421
5H5U|1|A|C|2422
5H5U|1|A|U|2423
5H5U|1|A|C|2424
5H5U|1|A|A|2425
5H5U|1|A|A|2426
5H5U|1|A|C|2427
5H5U|1|A|G|2428
5H5U|1|A|G|2429||A
5H5U|1|A|A|2430||A
5H5U|1|A|U|2431
5H5U|1|A|A|2432
5H5U|1|A|A|2433
5H5U|1|A|A|2434
5H5U|1|A|A|2435
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain M
- 50S ribosomal protein L15
- Chain X
- 50S ribosomal protein L27
- Chain Y
- 50S ribosomal protein L28
- Chain c
- 50S ribosomal protein L33
- Chain e
- 50S ribosomal protein L35
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