J6_5HAU_001

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5HAU|1|1A|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HAU|1|1A|G|43
5HAU|1|1A|C|44
*
5HAU|1|1A|G|167
5HAU|1|1A|G|168
5HAU|1|1A|A|169
5HAU|1|1A|A|170
5HAU|1|1A|C|171
*
5HAU|1|1A|G|202
5HAU|1|1A|G|203
5HAU|1|1A|A|204
5HAU|1|1A|G|205
5HAU|1|1A|A|206
5HAU|1|1A|G|207
5HAU|1|1A|G|208
5HAU|1|1A|A|209
5HAU|1|1A|A|210
5HAU|1|1A|A|211
5HAU|1|1A|G|212
*
5HAU|1|1A|C|219
5HAU|1|1A|G|220
5HAU|1|1A|A|221
5HAU|1|1A|C|222
5HAU|1|1A|U|223
*
5HAU|1|1A|A|250
5HAU|1|1A|C|251
5HAU|1|1A|C|252
5HAU|1|1A|A|253
5HAU|1|1A|G|254
*
5HAU|1|1A|C|452
5HAU|1|1A|U|453
5HAU|1|1A|A|454
5HAU|1|1A|A|455
5HAU|1|1A|G|456
5HAU|1|1A|U|457
5HAU|1|1A|A|458
5HAU|1|1A|C|459

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L34