J6_5HCP_003

3D structure

PDB id

5HCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5HCP|1|2A|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCP|1|2A|G|43
5HCP|1|2A|C|44
*
5HCP|1|2A|G|167
5HCP|1|2A|G|168
5HCP|1|2A|A|169
5HCP|1|2A|A|170
5HCP|1|2A|C|171
*
5HCP|1|2A|G|202
5HCP|1|2A|G|203
5HCP|1|2A|A|204
5HCP|1|2A|G|205
5HCP|1|2A|A|206
5HCP|1|2A|G|207
5HCP|1|2A|G|208
5HCP|1|2A|A|209
5HCP|1|2A|A|210
5HCP|1|2A|A|211
5HCP|1|2A|G|212
*
5HCP|1|2A|C|219
5HCP|1|2A|G|220
5HCP|1|2A|A|221
5HCP|1|2A|C|222
5HCP|1|2A|U|223
*
5HCP|1|2A|A|250
5HCP|1|2A|C|251
5HCP|1|2A|C|252
5HCP|1|2A|A|253
5HCP|1|2A|G|254
*
5HCP|1|2A|C|452
5HCP|1|2A|U|453
5HCP|1|2A|A|454
5HCP|1|2A|A|455
5HCP|1|2A|G|456
5HCP|1|2A|U|457
5HCP|1|2A|A|458
5HCP|1|2A|C|459

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34