J6_5HCP_004
3D structure
- PDB id
- 5HCP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.89 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 5HCP|1|2A|U|2097, 5HCP|1|2A|A|2399, 5HCP|1|2A|U|2401, 5HCP|1|2A|G|2439, 5HCP|1|2A|A|2441, 5HCP|1|2A|U|2442
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5HCP|1|2A|U|2095
5HCP|1|2A|U|2096
5HCP|1|2A|U|2097
5HCP|1|2A|A|2098
*
5HCP|1|2A|U|2254
5HCP|1|2A|U|2255
5HCP|1|2A|U|2256
5HCP|1|2A|G|2257
*
5HCP|1|2A|C|2269
5HCP|1|2A|G|2270
*
5HCP|1|2A|C|2292
5HCP|1|2A|G|2293
5HCP|1|2A|C|2294
5HCP|1|2A|C|2295
*
5HCP|1|2A|G|2395
5HCP|1|2A|C|2396
5HCP|1|2A|C|2397
5HCP|1|2A|U|2398
5HCP|1|2A|A|2399
5HCP|1|2A|G|2400
5HCP|1|2A|U|2401
5HCP|1|2A|G|2402
5HCP|1|2A|A|2403
5HCP|1|2A|A|2404
5HCP|1|2A|C|2405
5HCP|1|2A|C|2406
*
5HCP|1|2A|G|2432
5HCP|1|2A|A|2433
5HCP|1|2A|U|2434
5HCP|1|2A|C|2435
5HCP|1|2A|A|2436
5HCP|1|2A|A|2437
5HCP|1|2A|C|2438
5HCP|1|2A|G|2439
5HCP|1|2A|G|2440
5HCP|1|2A|A|2441
5HCP|1|2A|U|2442
5HCP|1|2A|A|2443
5HCP|1|2A|A|2444
5HCP|1|2A|A|2445
5HCP|1|2A|A|2446
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 21
- 50S ribosomal protein L28
- Chain 26
- 50S ribosomal protein L33
- Chain 28
- 50S ribosomal protein L35
- Chain 2D
- 50S ribosomal protein L2
- Chain 2P
- 50S ribosomal protein L15
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