J6_5HCQ_001

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5HCQ|1|1A|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCQ|1|1A|G|43
5HCQ|1|1A|C|44
*
5HCQ|1|1A|G|167
5HCQ|1|1A|G|168
5HCQ|1|1A|A|169
5HCQ|1|1A|A|170
5HCQ|1|1A|C|171
*
5HCQ|1|1A|G|202
5HCQ|1|1A|G|203
5HCQ|1|1A|A|204
5HCQ|1|1A|G|205
5HCQ|1|1A|A|206
5HCQ|1|1A|G|207
5HCQ|1|1A|G|208
5HCQ|1|1A|A|209
5HCQ|1|1A|A|210
5HCQ|1|1A|A|211
5HCQ|1|1A|G|212
*
5HCQ|1|1A|C|219
5HCQ|1|1A|G|220
5HCQ|1|1A|A|221
5HCQ|1|1A|C|222
5HCQ|1|1A|U|223
*
5HCQ|1|1A|A|250
5HCQ|1|1A|C|251
5HCQ|1|1A|C|252
5HCQ|1|1A|A|253
5HCQ|1|1A|G|254
*
5HCQ|1|1A|C|452
5HCQ|1|1A|U|453
5HCQ|1|1A|A|454
5HCQ|1|1A|A|455
5HCQ|1|1A|G|456
5HCQ|1|1A|U|457
5HCQ|1|1A|A|458
5HCQ|1|1A|C|459

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34