J6_5HD1_003

3D structure

PDB id

5HD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5HD1|1|2A|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HD1|1|2A|G|43
5HD1|1|2A|C|44
*
5HD1|1|2A|G|167
5HD1|1|2A|G|168
5HD1|1|2A|A|169
5HD1|1|2A|A|170
5HD1|1|2A|C|171
*
5HD1|1|2A|G|202
5HD1|1|2A|G|203
5HD1|1|2A|A|204
5HD1|1|2A|G|205
5HD1|1|2A|A|206
5HD1|1|2A|G|207
5HD1|1|2A|G|208
5HD1|1|2A|A|209
5HD1|1|2A|A|210
5HD1|1|2A|A|211
5HD1|1|2A|G|212
*
5HD1|1|2A|C|219
5HD1|1|2A|G|220
5HD1|1|2A|A|221
5HD1|1|2A|C|222
5HD1|1|2A|U|223
*
5HD1|1|2A|A|250
5HD1|1|2A|C|251
5HD1|1|2A|C|252
5HD1|1|2A|A|253
5HD1|1|2A|G|254
*
5HD1|1|2A|C|452
5HD1|1|2A|U|453
5HD1|1|2A|A|454
5HD1|1|2A|A|455
5HD1|1|2A|G|456
5HD1|1|2A|U|457
5HD1|1|2A|A|458
5HD1|1|2A|C|459

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34