Loop J6_5HKV

3D structure

PDB id: 5HKV (explore in PDB, NAKB, or RNA 3D Hub)
Description: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin
Experimental method: X-RAY DIFFRACTION
Resolution: 3.66 Å

Loop

Sequence: UUUA*UUUG*CG*CGCUC*GACUUAGUGAUCC*GCUCAACGGAUAAAA
Length: 43 nucleotides
Bulged bases: 5HKV|1|X|U|2103, 5HKV|1|X|A|2415, 5HKV|1|X|U|2417, 5HKV|1|X|G|2455, 5HKV|1|X|A|2457, 5HKV|1|X|U|2458
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5HKV|1|X|U|2101
5HKV|1|X|U|2102
5HKV|1|X|U|2103
5HKV|1|X|A|2104
*
5HKV|1|X|U|2270
5HKV|1|X|U|2271
5HKV|1|X|U|2272
5HKV|1|X|G|2273
*
5HKV|1|X|C|2285
5HKV|1|X|G|2286
*
5HKV|1|X|C|2308
5HKV|1|X|G|2309
5HKV|1|X|C|2310
5HKV|1|X|U|2311
5HKV|1|X|C|2312
*
5HKV|1|X|G|2410
5HKV|1|X|A|2411
5HKV|1|X|C|2412
5HKV|1|X|U|2413
5HKV|1|X|U|2414
5HKV|1|X|A|2415
5HKV|1|X|G|2416
5HKV|1|X|U|2417
5HKV|1|X|G|2418
5HKV|1|X|A|2419
5HKV|1|X|U|2420
5HKV|1|X|C|2421
5HKV|1|X|C|2422
*
5HKV|1|X|G|2448
5HKV|1|X|C|2449
5HKV|1|X|U|2450
5HKV|1|X|C|2451
5HKV|1|X|A|2452
5HKV|1|X|A|2453
5HKV|1|X|C|2454
5HKV|1|X|G|2455
5HKV|1|X|G|2456
5HKV|1|X|A|2457
5HKV|1|X|U|2458
5HKV|1|X|A|2459
5HKV|1|X|A|2460
5HKV|1|X|A|2461
5HKV|1|X|A|2462

Current chains

Chain X: 23s ribosomal RNA

Nearby chains

Chain 3: 50S ribosomal protein L35
Chain A: 50S ribosomal protein L2
Chain I: 50S ribosomal protein L15
Chain T: 50S ribosomal protein L27
Chain U: 50S ribosomal protein L28

J6_5HKV_002