J6_5HKV_003

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GC*GCACAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUAC

Length

37 nucleotides

Bulged bases

5HKV|1|X|C|184, 5HKV|1|X|A|226

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HKV|1|X|G|45
5HKV|1|X|C|46
*
5HKV|1|X|G|181
5HKV|1|X|C|182
5HKV|1|X|A|183
5HKV|1|X|C|184
5HKV|1|X|A|185
5HKV|1|X|C|186
*
5HKV|1|X|G|217
5HKV|1|X|G|218
5HKV|1|X|A|219
5HKV|1|X|A|220
5HKV|1|X|G|221
5HKV|1|X|A|222
5HKV|1|X|G|223
5HKV|1|X|A|224
5HKV|1|X|A|225
5HKV|1|X|A|226
5HKV|1|X|G|227
*
5HKV|1|X|C|234
5HKV|1|X|G|235
5HKV|1|X|A|236
5HKV|1|X|U|237
5HKV|1|X|U|238
*
5HKV|1|X|A|265
5HKV|1|X|A|266
5HKV|1|X|G|267
5HKV|1|X|A|268
5HKV|1|X|G|269
*
5HKV|1|X|C|472
5HKV|1|X|U|473
5HKV|1|X|A|474
5HKV|1|X|A|475
5HKV|1|X|A|476
5HKV|1|X|U|477
5HKV|1|X|A|478
5HKV|1|X|C|479

Current chains

Chain X

23s ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34