J6_5HL7_001

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GC*GCACAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUAC

Length

37 nucleotides

Bulged bases

5HL7|1|X|C|184, 5HL7|1|X|A|226

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HL7|1|X|G|45
5HL7|1|X|C|46
*
5HL7|1|X|G|181
5HL7|1|X|C|182
5HL7|1|X|A|183
5HL7|1|X|C|184
5HL7|1|X|A|185
5HL7|1|X|C|186
*
5HL7|1|X|G|217
5HL7|1|X|G|218
5HL7|1|X|A|219
5HL7|1|X|A|220
5HL7|1|X|G|221
5HL7|1|X|A|222
5HL7|1|X|G|223
5HL7|1|X|A|224
5HL7|1|X|A|225
5HL7|1|X|A|226
5HL7|1|X|G|227
*
5HL7|1|X|C|234
5HL7|1|X|G|235
5HL7|1|X|A|236
5HL7|1|X|U|237
5HL7|1|X|U|238
*
5HL7|1|X|A|265
5HL7|1|X|A|266
5HL7|1|X|G|267
5HL7|1|X|A|268
5HL7|1|X|G|269
*
5HL7|1|X|C|472
5HL7|1|X|U|473
5HL7|1|X|A|474
5HL7|1|X|A|475
5HL7|1|X|A|476
5HL7|1|X|U|477
5HL7|1|X|A|478
5HL7|1|X|C|479

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34