Loop J6_5HL7

3D structure

PDB id: 5HL7 (explore in PDB, NAKB, or RNA 3D Hub)
Description: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin
Experimental method: X-RAY DIFFRACTION
Resolution: 3.55 Å

Loop

Sequence: UUUA*UUUG*CG*CGCU*ACUUAGUGAUCC*GCUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 5HL7|1|X|U|2103, 5HL7|1|X|U|2417, 5HL7|1|X|G|2455, 5HL7|1|X|A|2457, 5HL7|1|X|U|2458
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5HL7|1|X|U|2101
5HL7|1|X|U|2102
5HL7|1|X|U|2103
5HL7|1|X|A|2104
*
5HL7|1|X|U|2270
5HL7|1|X|U|2271
5HL7|1|X|U|2272
5HL7|1|X|G|2273
*
5HL7|1|X|C|2285
5HL7|1|X|G|2286
*
5HL7|1|X|C|2308
5HL7|1|X|G|2309
5HL7|1|X|C|2310
5HL7|1|X|U|2311
*
5HL7|1|X|A|2411
5HL7|1|X|C|2412
5HL7|1|X|U|2413
5HL7|1|X|U|2414
5HL7|1|X|A|2415
5HL7|1|X|G|2416
5HL7|1|X|U|2417
5HL7|1|X|G|2418
5HL7|1|X|A|2419
5HL7|1|X|U|2420
5HL7|1|X|C|2421
5HL7|1|X|C|2422
*
5HL7|1|X|G|2448
5HL7|1|X|C|2449
5HL7|1|X|U|2450
5HL7|1|X|C|2451
5HL7|1|X|A|2452
5HL7|1|X|A|2453
5HL7|1|X|C|2454
5HL7|1|X|G|2455
5HL7|1|X|G|2456
5HL7|1|X|A|2457
5HL7|1|X|U|2458
5HL7|1|X|A|2459
5HL7|1|X|A|2460
5HL7|1|X|A|2461
5HL7|1|X|A|2462

Current chains

Chain X: 23S ribosomal RNA

Nearby chains

Chain 3: 50S ribosomal protein L35
Chain A: 50S ribosomal protein L2
Chain I: 50S ribosomal protein L15
Chain T: 50S ribosomal protein L27
Chain U: 50S ribosomal protein L28

J6_5HL7_002