J6_5IB7_001

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5IB7|1|14|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB7|1|14|G|45
5IB7|1|14|C|46
*
5IB7|1|14|G|179
5IB7|1|14|G|180
5IB7|1|14|A|181
5IB7|1|14|A|182
5IB7|1|14|C|183
*
5IB7|1|14|G|214
5IB7|1|14|G|215
5IB7|1|14|A|216
5IB7|1|14|G|217
5IB7|1|14|A|218
5IB7|1|14|G|219
5IB7|1|14|G|220
5IB7|1|14|A|221
5IB7|1|14|A|222
5IB7|1|14|A|223
5IB7|1|14|G|224
*
5IB7|1|14|C|231
5IB7|1|14|G|232
5IB7|1|14|A|233
5IB7|1|14|C|234
5IB7|1|14|U|235
*
5IB7|1|14|A|262
5IB7|1|14|C|263
5IB7|1|14|C|264
5IB7|1|14|A|265
5IB7|1|14|G|266
*
5IB7|1|14|C|426
5IB7|1|14|U|427
5IB7|1|14|A|428
5IB7|1|14|A|429
5IB7|1|14|G|430
5IB7|1|14|U|431
5IB7|1|14|A|432
5IB7|1|14|C|433

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L34