J6_5IB8_003

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5IB8|1|1H|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB8|1|1H|G|45
5IB8|1|1H|C|46
*
5IB8|1|1H|G|179
5IB8|1|1H|G|180
5IB8|1|1H|A|181
5IB8|1|1H|A|182
5IB8|1|1H|C|183
*
5IB8|1|1H|G|214
5IB8|1|1H|G|215
5IB8|1|1H|A|216
5IB8|1|1H|G|217
5IB8|1|1H|A|218
5IB8|1|1H|G|219
5IB8|1|1H|G|220
5IB8|1|1H|A|221
5IB8|1|1H|A|222
5IB8|1|1H|A|223
5IB8|1|1H|G|224
*
5IB8|1|1H|C|231
5IB8|1|1H|G|232
5IB8|1|1H|A|233
5IB8|1|1H|C|234
5IB8|1|1H|U|235
*
5IB8|1|1H|A|262
5IB8|1|1H|C|263
5IB8|1|1H|C|264
5IB8|1|1H|A|265
5IB8|1|1H|G|266
*
5IB8|1|1H|C|426
5IB8|1|1H|U|427
5IB8|1|1H|A|428
5IB8|1|1H|A|429
5IB8|1|1H|G|430
5IB8|1|1H|U|431
5IB8|1|1H|A|432
5IB8|1|1H|C|433

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain P8

50S ribosomal protein L34