J6_5IBB_001

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5IBB|1|14|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IBB|1|14|G|45
5IBB|1|14|C|46
*
5IBB|1|14|G|179
5IBB|1|14|G|180
5IBB|1|14|A|181
5IBB|1|14|A|182
5IBB|1|14|C|183
*
5IBB|1|14|G|214
5IBB|1|14|G|215
5IBB|1|14|A|216
5IBB|1|14|G|217
5IBB|1|14|A|218
5IBB|1|14|G|219
5IBB|1|14|G|220
5IBB|1|14|A|221
5IBB|1|14|A|222
5IBB|1|14|A|223
5IBB|1|14|G|224
*
5IBB|1|14|C|231
5IBB|1|14|G|232
5IBB|1|14|A|233
5IBB|1|14|C|234
5IBB|1|14|U|235
*
5IBB|1|14|A|262
5IBB|1|14|C|263
5IBB|1|14|C|264
5IBB|1|14|A|265
5IBB|1|14|G|266
*
5IBB|1|14|C|426
5IBB|1|14|U|427
5IBB|1|14|A|428
5IBB|1|14|A|429
5IBB|1|14|G|430
5IBB|1|14|U|431
5IBB|1|14|A|432
5IBB|1|14|C|433

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L34