J6_5J4B_001

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

5J4B|1|1A|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4B|1|1A|G|44
5J4B|1|1A|C|45
*
5J4B|1|1A|G|168
5J4B|1|1A|G|169
5J4B|1|1A|A|170
5J4B|1|1A|A|171
5J4B|1|1A|C|172
*
5J4B|1|1A|G|203
5J4B|1|1A|G|204
5J4B|1|1A|A|205
5J4B|1|1A|G|206
5J4B|1|1A|A|207
5J4B|1|1A|G|208
5J4B|1|1A|G|209
5J4B|1|1A|A|210
5J4B|1|1A|A|211
5J4B|1|1A|A|212
5J4B|1|1A|G|213
*
5J4B|1|1A|C|220
5J4B|1|1A|G|221
5J4B|1|1A|A|222
5J4B|1|1A|C|223
5J4B|1|1A|U|224
*
5J4B|1|1A|A|251
5J4B|1|1A|C|252
5J4B|1|1A|C|253
5J4B|1|1A|A|254
5J4B|1|1A|G|255
*
5J4B|1|1A|C|453
5J4B|1|1A|U|454
5J4B|1|1A|A|455
5J4B|1|1A|A|456
5J4B|1|1A|G|457
5J4B|1|1A|U|458
5J4B|1|1A|A|459
5J4B|1|1A|C|460

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34